PubVenn allows you to explore PubMed visually by generating Venn diagrams. You can enter any multi-term search to generate a Venn diagram that allows you to view the size of the citation set for each term as well as how those sets interact. The tool provides an example PubMed search strategy with links to relevant publications. Selecting the 'Expanded subjects' checkbox will include other relevant terms from PubMed.
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Availability: Free online Data Source: PubMed Import Formats: Free text Export Formats: Save as .png URL: https://pubvenn.appspot.com/ Also try Search Workbench: https://searchworkbench.info/ |
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Enter a free text search into the PubReMiner tool and it will query PubMed for relevant results. The tool analyses these results and provides tables that rank the frequency of words in the title and abstract of the articles and also relevant MeSH headings. Other ranked tables include journals in which your query is published the most and authors which are most active in related fields.
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Availability: Free online Data Source: PubMed Tool Type: Text frequency Import Formats: Free text Export Formats: Save results as a .txt file |
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Coremine Medical is a product of the PubGene Company designed to be used by anyone seeking information on health, medicine and biology. It is ideal for those seeking an overview of a complex subject while allowing the possibility to "drill down" to specific details. Search results are presented in a dashboard format comprised of panels containing various categories of information ranging from introductory sources to the latest scientific articles. Coremine presents search results as a graphic network that describes relationships discovered through text-mining.
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Availability: Register for free account Data Source: PubMed Tool Type: Visualisation, clustering, text frequency, relationship networks Features: File upload, Hyperbrowser, search history, alerts Import Formats: Free text, tab delimited file can be uploaded Export Formats: None URL: https://www.coremine.com/medical/ Instructions: https://www.coremine.com/medical/help.html |
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The MeSH on Demand tool uses the NLM Medical Text Indexer to identifiy MeSH vocabulary in submitted text (paste up to five pages). The results are displayed in a list as well as highlighted in the pasted text (also defines term frequency within the text). Links to similar PubMed related citations are included.
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Availability: Free online Data Source: PubMed Tool Type: Text analyser Import Formats: Free text Export Formats: Text file Known Limitations: Non English text needs to be translated first |
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Yale MeSH Analyzer is a tool that retrieves article metadata from Medline records and presents the indexing data in an easy to scan grid format. This allows comparison of MeSH headings across publications.
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Availability: Free online Data Source: PubMed Tool Type: Comparison Features: Easy to view comparison of article indexing Import Formats: Free text (type or paste) Export Formats: Excel, HTML table Known Limitations: Query with PubMed IDs only - maximum 20 |
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Carrot2 is an Open Source Results Clustering Engine that can automatically organise search results into topics. Carrot2 can query PubMed and allows boolean searching.
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Availability: Free online, download Data Source: PubMed Tool Type: Clustering Features: Simple online interface Import Formats: Free text Export Formats: View on screen Known Limitations: No export options |
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